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 Bibliografske baze podataka

Janko Diminić
(319653)

 
 
 
Verzija za printanje   
 
  Poglavlja u knjizi
 

1. Cullum, John; Starčević, Antonio; Žučko, Jurica; Diminić, Janko; Long, Paul F.; Hranueli, Daslav.
ClustScan : an integrated program package for the detection and semi-automatic annotation of secondary metabolite clusters in genomic and metagenomic DNA data sets // Handbook of Molecular Microbial Ecology, Volume I: Metagenomics and Complementary Approaches / de Bruijn, J. Frans (ur.).
Hoboken : John Wiley & Sons, Inc., 2011.. Str. 423-432.
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  Izvorni znanstveni i pregledni radovi u CC časopisima
 

1. Gacesa, Ranko; Baranasic, Damir; Starcevic, Antonio; Diminic, Janko; Korlević, Marino; Najdek-Dragić, Mirjana; Blažina, Maria; Oršolić, Davor; Kolesarić, Domagoj; Long, Paul F.; Cullum, John; Hranueli, Daslav; Orlić, Sandi; Zucko, Jurica.
Bioprospecting for Genes Encoding Hydrocarbon-Degrading Enzymes from Metagenomic Samples Isolated from Northern Adriatic Sea Sediments. // Food technology and biotechnology. 56 (2018) , 2; 270-277 (kratko priopćenje, znanstveni). URL link to workURL link to work

2. Butorac, Ana; Solak Mekić, Meliha; Hozić, Amela; Diminić, Janko; Gamberger, Dragan; Nišavić, Marija; Cindrić, Mario.
Benefits of selective peptide derivatization with sulfonating reagent at acidic pH for facile matrix-assisted laser desorption/ionization de novo sequencing. // RCM. Rapid communications in mass spectrometry. 30 (2016) , 14; 1687-1694 (članak, znanstveni). URL link to workURL link to work

3. Korlević, Marino; Žučko, Jurica; Najdek Dragić, Mirjana; Blažina, Maria; Pustijanac, Emina; Vojvoda Zeljko, Tanja; Gačeša, Ranko; Baranašić, Damir; Starčević, Antonio; Diminić, Janko; Long, Paul; Cullum, John; Hranueli, Daslav; Orlić, Sandi.
Bacterial diversity of polluted surface sediments in northern Adriatic Sea determined by pyrosequencing. // Systematic and applied microbiology. 38 (2015) , 3; 189-197 (članak, znanstveni). URL link to workURL link to work

4. Baranasic, Damir; Zucko, Jurica; Diminic, Janko; Gacesa, Ranko; Long, Paul F.; Cullum, John; Hranueli, Daslav; Starcevic, Antonio.
Predicting substrate specificity of adenylation domains of nonribosomal peptide synthetases and other protein properties by latent semantic indexing. // Journal of industrial microbiology & biotechnology. 41 (2014) , 2; 461-467 (članak, znanstveni).

5. Diminic, Janko; Starcevic, Antonio; Lisfi, Mohamed; Baranasic, Damir; Gacesa, Ranko; Hranueli, Daslav; Long, Paul F.; Cullum, John; Zucko, Jurica.
Evolutionary concepts in natural products discovery: what actinomycetes have taught us. // Journal of industrial microbiology & biotechnology. 41 (2014) , 2; 211-217 (članak, znanstveni).

6. Baranašić, Damir; Zucko, Jurica; Diminic, Janko; Gacesa, Ranko; Long, F Paul; Cullum, John; Hranueli, Daslav; Starcevic, Antonio.
Prediction of the substrate specificity of adenylation domains of non-ribosomal peptide synthetases and other protein properties by latent semantic indexing. // Journal of industrial microbiology & biotechnology. 41 (2013) , 2; 461-467 (članak, znanstveni). URL link to work

7. Butorac, Ana; Dodig, Ivana; Bačun-Družina, Višnja; Tishbee, Arye; Mrvčić, Jasna; Hock, Karlo; Diminić, Janko; Cindrić, Mario.
The effect of starvation stress on Lactobacillus brevis L62 protein profile determined by de novo sequencing in positive and negative mass spectrometry ion mode. // RCM. Rapid communications in mass spectrometry. 27 (2013) , 9; 1045-1054 (članak, znanstveni). prilozen text radaURL link to workURL link to work

8. Diminic, Janko; Starčević, Antonio; Lisfi, Mohamed; Baranašić, Damir; Gacesa, Ranko; Hranueli, Daslav; Long, F Paul; Cullum, John; žučko, Jurica.
Evolutionary concepts in natural products discovery - what actinomycetes have taught us. // Journal of industrial microbiology & biotechnology. 41 (2013) , 2; 211-217 (članak, znanstveni). URL link to work

9. Diminić, Janko; Žučko, Jurica; Trninić Ruzić, Ida; Gačeša, Ranko; Hranueli, Daslav; Long, Paul F.; Cullum, John; Starčević, Antonio.
Databases of the Thiotemplate Modular Systems (CSDB) and their in silico recombinants (r-CSDB). // Journal of industrial microbiology & biotechnology. 40 (2013) , 6; 653-659 (članak, znanstveni). prilozen text radaURL link to workURL link to work

10. Žučko, Jurica; Starčević, Antonio; Diminić, Janko; Elbekali, Mouhsine; Lisfi, Mohamed; Long, Paul F.; Cullum, John; Hranueli, Daslav.
Synthetic Biology : A novel approach for the construction of industrial microorganisms. // Food technology and biotechnology. 51 (2013) , 1; 3-11 (pregledni rad, znanstveni). prilozen text radaURL link to work

11. Starčević, Antonio; Wolf, Kerstin; Diminić, Janko; Žučko, Jurica; Long, F Paul; Cullum, John; Hranueli, Daslav.
Recombinatorial biosynthesis of polyketides. // Journal of industrial microbiology & biotechnology. 39 (2012) , 3; 503-511 (članak, znanstveni). prilozen text radaURL link to workURL link to work

12. Starčević, Antonio; Diminić, Janko; Žučko, Jurica; Elbekali, Mouhsine; Schlosser, Tobias; Lisfi, Mohamed; Vukelić, Ana; Long, F Paul; Hranueli, Daslav; Cullum, John.
A novel docking domain interface model that can predict recombination between homoeologous modular biosynthetic gene clusters. // Journal of industrial microbiology & biotechnology. 38 (2011) , 9; 1295-1304 (članak, znanstveni). URL link to workURL link to work

13. Žučko, Jurica; Starčević, Antonio; Diminić, Janko; Elbekali, Mouhsine; Lisfi, Mohamed; Long, Paul F.; Cullum, John; Hranueli, Daslav.
From DNA Sequences to Chemical Structures – Methods for Mining Microbial Genomic and Metagenomic Datasets for New Natural Products. // Food technology and biotechnology. 48 (2010) , 2; 234-242 (članak, znanstveni). prilozen text rada
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  Znanstveni radovi u drugim časopisima
 

1. Dunlap, C Walter; Starcevic, Antonio; Baranasic, Damir; Diminić, Janko; Zucko, Jurica; Gacesa, Ranko; van Oppen, JH Madeleine; Hranueli, Daslav; Cullum, John; Long, F Paul.
KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database. // Bmc genomics. 14 (2013) ; 509 (Article number) (članak, znanstveni). prilozen text radaURL link to workURL link to work

2. Dunlap, Walter C.; Starcevic, Antonio; Baranasic, Damir; Diminic, Janko; Zucko, Jurica; Gacesa, Ranko; van Oppen, Madeleine J. H.; Hranueli, Daslav; Cullum, John; Long, Paul F.
KEGG orthology-based annotation of the predicted proteome of Acropora digitifera: ZoophyteBase - an open access and searchable database of a coral genome. // Bmc genomics. 14 (2013) ; 509-509 (pregledni rad, znanstveni). URL link to work
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  Kongresno priopćenje (sažeci) u CC časopisu
 

1. Zucko, Jurica; Fridjonsson, H Olafur; Petursdottir, K Solveig; Gacesa, Ranko; Diminic, Janko; Long, F Paul; Cullum, John; Hranueli, Daslav; Hreggvidsson, O Gudmundur; Starcevic, Antonio.
Browsing metagenomes for novel starch and carbohydrate industry enzymes - AMYLOMICS case study // CURRENT OPINION IN BIOTECHNOLOGY Volume: 24 Supplement: 1 / Munis Dundar (ur.).
Amsterdam, Netherlands : Elsevier, 2013. S21-S21 (pozvano predavanje,međunarodna recenzija,sažetak,znanstveni).
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  Znanstveni radovi u zbornicima skupova s međunar.rec.
 

1. Starčević, Antonio; Diminić, Janko; Zucko, Jurica; Long, Paul F.; Cullum, John; Hranueli, Daslav.
3DIS : An expert system for in silico drug design and discovery // Proceedings of the 7th International Congress of Food Technologists, Biotechnologists and Nutritionists / Medić, Helga (ur.).
Zagreb : Croatian Society of Food Technologists, Biotechnologists and Nutritionists, 2011. 10-15 (predavanje,međunarodna recenzija,objavljeni rad,znanstveni). prilozen text rada
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  Sažeci u zbornicima skupova
 

1. Širac, Tea; Banić, Martina; Uroić, Ksenija; Diminić, Janko; Starčević, Antonio; Žučko, Jurica.
Dynamics of urinary microbiota following antibiotic therapy // .
(poster,sažetak,znanstveni).

2. Diminić, Janko; Cindrić, Mario; Perica, Kristina; Ceprnja, Marina; Melvan, Ena; Hranueli, Daslav; Žučko, Jurica.
A novel computational approach applicable to human microbiome studies – urinary tract microbiome example // The 2nd Microbiome R and D and Business Collaboration Forum : Europe : abstracts.
(poster,sažetak,stručni). URL link to work

3. Melvan, Ena; Starcevic, Antonio; Hranueli, Daslav; Diminic, Janko; Zucko, Jurica; Cindric, Mario.
Mass Spectrometry, clinical proteomics and bioinformatics as microbial crime fighters // Book of Abstracts.
2014. (poster,sažetak,znanstveni).

4. Starcevic, Antonio; Cindrić, Mario; Diminić, Janko; Butorac, Ana; Bačun-Družina, Višnja; Gaćeša, Ranko; Friganović, Maja.
Mass spectrometry based clinical proteomics // Book of Abstracts / Zlatko Kniewald (ur.).
Zagreb : Croatian Academy of Engineering and University of Zagreb, 2013. 118-119 (predavanje,sažetak).

5. Hranueli, Daslav; Starcevic, Antonio; Zucko, Jurica; Diminić, Janko; Gacesa, Ranko; Branasic, Damir; Long, F Paul; Cullum, John.
Microbial genome browsing // Book of Abstracts / Silvija Černi, Martina Šeruga Musić, Dijana Škorić (ur.).
Zagreb : Hrvatsko mikrobiološko društvo, 2012. 21-21 (pozvano predavanje,domaća recenzija,sažetak,znanstveni).

6. Hreggvidsson, O Gudmundur; Fridjonsson, H Olafur; Petursdóttir, K Solveig; Aevarsson, Arnthor; Altenbuchner, Josef; Fotheringham, Ian; Defretin-Huchette, Sophie; Dijkhuizen, Lubbert; Diminic, Janko; Dobruchowska, Justyna; Gudmundsdottir, Elisabet; Hranueli, Daslav; Kamerling, P Johannis; Kristjánsson, K Jakob; Nordberg-Karlsson, Eva; Maubourguet, Sébastien; Starcevic, Antonio; Zucko, Jurica.
Amyloenzymes captured by targeted Metagenomics // CBM9 conference.
(poster,međunarodna recenzija,sažetak).

7. Cullum, John; Zucko, Jurica; Starcevic, Antonio; Diminic, Janko; Lisfi, Mohamed; Long F Paul; Hranueli, Daslav.
Towards novel modular polyketide synthases – lessons learnt from evolution // CIPKEBIP Annual Conference 2011 Program "Biosynthetic and metabolic engineering in industrial drug and process development" / Livija Tušar, Enej Kuščer, Hrvoje Petković, Dušan Turk (ur.).
Ljubljana, Slovenia : Centre of Excellence for Integrated Approaches in Chemistry and Biology of Protein, 2011. 9-9 (pozvano predavanje,međunarodna recenzija,sažetak).

8. Starcevic, Antonio; Diminic, Janko; Zucko, Jurica; Long F Paul; Cullum, John; Hranueli, Daslav.
An expert system for in silico drug design and discovery // Book of Abstracts / Medić, Helga (ur.).
Zagreb : Croatian Society of Food Technologists, Biotechnologists and Nutritionists, 2011. 29-29 (predavanje,međunarodna recenzija,sažetak,znanstveni).

9. Starcevic, Antonio; Wolf, Kerstin; Diminic, Janko; Zucko, Jurica; Trninic Ruzic, Ida; Long F Paul; Hranueli, Daslav; Cullum, John.
Modelling of homologous recombination in modular polyketide synthases combined with synthetic biology as a strategy for producing biologically active lead compounds // Abstracts / Eriko Takano (ur.).
Brussels : European Science Foundation I Research Conferences Unit, 2011. 63-63 (predavanje,međunarodna recenzija,sažetak,znanstveni). URL link to work

10. Starcevic, Antonio; Zucko, Jurica; Diminic, Janko; Long F Paul; Cullum, John; Hranueli, Daslav.
Genomic data analysis - "What Would Google Do? // CIPKEBIP Annual Conference 2011 Program "Biosynthetic and metabolic engineering in industrial drug and process development" / Livija Tušar, Enej Kuščer, Hrvoje Petković, Dušan Turk (ur.).
Ljubljana, Slovenia : Centre of Excellence for Integrated Approaches in Chemistry and Biology of Protein, 2011. 11-11 (pozvano predavanje,međunarodna recenzija,sažetak,znanstveni).

11. Zucko, Jurica; Diminic, Janko; Starcevic, Antonio; Dragovic-Uzelac, Verica; Hranueli, Daslav; Serafini, Mauro; Long F Paul; Cullum, John; Sonicki, Zdenko; Edwards Karen.
Nutrigenomics and individual human genomes // Book of Abstracts / Medić, Helga (ur.).
Zagreb : Croatian Society of Food Technologists, Biotechnologists and Nutritionists, 2011. 51-51 (predavanje,međunarodna recenzija,sažetak,znanstveni).
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  Disertacije
 

1. Janko Diminić.
NUTRIGENOMIČKA ANALIZA METABOLIČKIH PUTOVA U KVASCU SACCHAROMYCES CEREVISIAE IŠČITAVANJEM REVERZNE TRANSLACIJE UZ POMOĆ DE NOVO SEKVENCIRANJA PEPTIDA / doktorska disertacija.
Zagreb : Prehrambeno-biotehnološki fakultet, 11.07. 2014, 89 str. Voditelj: Antonio Starčević.
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  Vođenje disertacija, magistarskih i diplomskih radova
 

1. Kolesarić, Domagoj.
BIOINFORMATIČKA ANALIZA ALKAN 1-MONOOKSIGENAZA OTKRIVENIH U METAGENOMU SEDIMENTA SJEVERNOG JADRANA / završni rad - diplomski/integralni studij.
Zagreb : Prehrambeno-biotehnološki fakultet, 21.09. 2015., 42 str. Voditelj: Žučko, Jurica.

2. Oršolić, Davor.
In silico karakterizacija metagenomskih alkan 1-monooksigenaza / završni rad - diplomski/integralni studij.
Zagreb : Prehrambeno-biotehnološki fakultet, 28.09. 2015., 40 str. Voditelj: Žučko, Jurica.

3. Tomasović, Ante.
OPTIMIZACIJA I USPOREDBA ALGORITAMA ZA SRAVNJIVANJE KRATKIH SEKVENCIJA PROTEINA / završni rad - diplomski/integralni studij.
Zagreb : Prehrambeno-biotehnološki fakultet, 20.07 2015., 40 str. Voditelj: Starčević, Antonio.

4. Topić, Ljerka.
Metagenome mining for genes involved in alkane degradation / završni rad - diplomski/integralni studij.
Zagreb : Prehrambeno-biotehnološki fakultet, 03.07. 2014., 107 str. Voditelj: Starčević, Antonio.

5. Gluhak, Diana.
Diet and genes – assessments of Diabetes mellitus type 2 biological networks / završni rad - diplomski/integralni studij.
Zagreb : Prehrambeno-biotehnološki fakultet, 28.09. 2011., 107 str. Voditelj: Žučko, Jurica.
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