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Udžbenici i skripta (1)

Izvorni znanstveni i pregledni radovi u CC časopisima (22)
Znanstveni radovi u drugim časopisima (2)
Ostali radovi u drugim časopisima (2)

Plenarna izlaganja (2)
Sažeci u zbornicima skupova (17)

Neobjavljena sudjelovanja na skupovima (2)
Diplomski radovi (5)

Druge vrste radova (7)
 
Verzija za printanje   
 
  Udžbenici i skripta
 

1. Šiber, Antonio.
Molekularna biofizika .
Zagreb : Antonio Šiber, 2012. URL link to work
Vrh
 
  Izvorni znanstveni i pregledni radovi u CC časopisima
 

1. Marion, Sanjin; Šiber, Antonio.
Ejecting phage DNA against cellular turgor pressure. // Biophysical journal. 107 (2014) , 8; 1924-1929 (članak, znanstveni). URL link to workURL link to work

2. Popović, Marko; Šiber, Antonio.
Lattice-gas Poisson-Boltzmann approach for sterically asymmetric electrolytes. // Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 88 (2013) ; 022302-1-022302-5 (članak, znanstveni). URL link to workURL link to work

3. Šiber, Antonio; Ziherl, Primož.
Many-Body Contact Repulsion of Deformable Disks. // Physical Review Letters. 110 (2013) ; 214301-1-214301-5 (članak, znanstveni). URL link to workURL link to work

4. Šiber, Antonio; Lošdorfer Božič, Anže; Podgornik, Rudolf.
Energies and pressures in viruses: contribution of nonspecific electrostatic interactions. // Physical chemistry chemical physics. 14 (2012) , 11; 3697-4012 (članak, znanstveni). URL link to workURL link to work

5. Leforestier, Amelie; Šiber, Antonio; Livolant, Francoise; Podgornik, Rudolf.
Protein-DNA Interactions Determine the Shapes of DNA Toroids Condensed in Virus Capsids. // Biophysical journal. 100 (2011) , 9; 2209-2216 (članak, znanstveni). URL link to workURL link to work

6. Lošdorfer Božič, Anže; Šiber, Antonio; Podgornik, Rudolf.
Electrostatic self-energy of a partially formed spherical shell in salt solution: Application to stability of tethered and fluid shells as models for viruses and vesicles. // Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 83 (2011) , 4; 041916 -1-041916 -13 (članak, znanstveni). URL link to workURL link to work

7. Šiber, Antonio; Buljan, Hrvoje.
Theoretical and experimental analysis of a thin elastic cylindrical tube acting as a non-Hookean spring. // Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 83 (2011) , 6; 067601-1-067601-4 (članak, znanstveni). URL link to workURL link to work

8. Šiber, Antonio; Rajter, R. F.; French, R. H.; Ching, W. Y.; Parsegian, V. A.; Podgornik, Rudolf.
: Dispersion interaction of a single-walled carbon nanotube with a substrate. // Journal of Vacuum Science and Technology B: Microelectronics and Nanometer Structures. 28 (2010) , 3; C4A17-C4A24 (članak, znanstveni). URL link to workURL link to work

9. Šiber, Antonio; Zandi, Roya; Podgornik, Rudolf.
Thermodynamics of nanospheres encapsulated in virus capsids. // Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 81 (2010) ; 051919-1-051919-11 (članak, znanstveni). URL link to workURL link to work

10. Šiber, Antonio; Majdandžić, Antonio.
Spontaneous curvature as a regulator of the size of virus capsids. // Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 80 (2009) , 2; 021910-1-021910-7 (članak, znanstveni). URL link to workURL link to work

11. Šiber, Antonio; Podgornik, Rudolf.
Stability of elastic icosadeltahedral shells under uniform external pressure: Application to viruses under osmotic pressure. // Physical Review E. 79 (2009) , Part 1; 011919-1-011919-5 (članak, znanstveni). URL link to workURL link to work

12. Šiber, Antonio; Rajter, R. F.; French, R. H.; Ching, W. Y.; Parsegian, V. A.; Podgornik, Rudolf.
Dispersion interactions between optically anisotropic cylinders at all separations: Retardation effects for insulating and semiconducting single-wall carbon nanotubes. // Physical Review B - Condensed Matter and Materials Physics. 80 (2009) , 16; 165414-1-165414-10 (članak, znanstveni). URL link to workURL link to work

13. Gumhalter, Branko; Šiber, Antonio; Buljan, Hrvoje; Fauster, Thomas.
Nonadiabatic dynamics of electron scattering from adsorbates in surface bands. // Physical Review B - Condensed Matter and Materials Physics. 78 (2008) , 15; 155410-1-155410-15 (članak, znanstveni). URL link to workURL link to work

14. Šiber, Antonio; Dragar, Miran; Parsegian, V. Adrian; Podgornik, Rudolf.
Packing nanomechanics of viral genomes. // European Physical Journal E. 26 (2008) , 3; 317-325 (članak, znanstveni). URL link to workURL link to work

15. Šiber, Antonio; Gumhalter, Branko.
Phonon-mediated bound state resonances in inelastic atom– surface scattering. // Journal of Physics: Condensed Matter. 20 (2008) , 22; 224002-1-224002-10 (članak, znanstveni). URL link to workURL link to work

16. Šiber, Antonio; Podgornik, Rudolf.
Nonspecific interactions in spontaneous assembly of empty versus functional single-stranded RNA viruses. // Physical Review E - Statistical, Nonlinear, and Soft Matter Physics. 78 (2008) , 5 Part 1; 051915-1-051915-9 (članak, znanstveni). URL link to workURL link to work

17. Šiber, Antonio.
Continuum and all-atom description of the energetics of graphene nanocones. // Nanotechnology. 18 (2007) , 19; 375705-6 (članak, znanstveni). URL link to work

18. Šiber, Antonio; Gumhalter, Branko.
Reply to “ Comment on ‘ Suppression of inelastic bound-state resonance effects by the dimensionality of an atom-surface scattering event’ ”. // Physical Review B. 75 (2007) ; 046402-1 (članak, znanstveni). URL link to work

19. Šiber, Antonio; Podgornik, Rudolf.
Role of electrostatic interactions in the assembly of empty spherical viral capsids. // Physical Review E - Statistical Physics, Plasmas, Fluids, and Related Interdisciplinary Topics. 76 (2007) , 6 Part 1; 061906-1-061906-10 (članak, znanstveni). URL link to work

20. Šiber, Antonio.
Buckling transition in icosahedral shells subjected to volume conservation constraint and pressure: Relations to virus maturation. // Physical Review E. Statistical Physics, Plasmas, Fluids, & Related Interdisciplinary Topics. 73 (2006) , 6 Part 1; 061915-1 (članak, znanstveni). URL link to work

21. Šiber, Antonio.
Energies of sp2 carbon shapes with pentagonal disclinations and elasticity theory. // Nanotechnology. 17 (2006) , 14; 3598-3606 (članak, znanstveni).

22. Šiber, Antonio.
Shapes and energies of giant icosahedral fullerenes: Onset of ridge sharpening transition. // The European Physical Journal B. 53 (2006) , 3; 395-400 (članak, znanstveni).
Vrh
 
  Znanstveni radovi u drugim časopisima
 

1. Lošdorfer Božič, Anže; Šiber, Antonio; Podgornik, Rudolf.
Statistical analysis of sizes and shapes of virus capsids and their resulting elastic properties. // Journal of biological physics. 39 (2013) ; 215-228 (članak, znanstveni). URL link to workURL link to work

2. Lošdorfer Božič, Anže; Šiber, Antonio; Podgornik, Rudi.
How simple can a model of an empty viral capsid be? Charge distributions in viral capsids. // JOURNAL OF BIOLOGICAL PHYSICS. 38 (2012) , 4; 657-671 (članak, znanstveni). URL link to workURL link to work
Vrh
 
  Ostali radovi u drugim časopisima
 

1. Šiber, Antonio.
Fizika (i ponešto matematike, kemije i biologije) virusa. // Matematičko-fizički list. 3 (2009) ; 147-155 (pregledni rad, ostalo).

2. Šiber, Antonio; Dragar, Miran; Parsegian, V. Adrian; Podgornik, Rudolf.
From bulk to encapsidated DNA: energetics and density of DNA packed in bacteriophage capsids. // Europhysics news. 39 (2008) , 4; 22-22 (kratko priopćenje, ostalo). URL link to work
Vrh
 
  Plenarna izlaganja
 

1. Šiber, Antonio.
Are electrostatic and elastic properties of viruses tuned by evolution and how? // II Reunion BioFiViNet / de Pablo, Pedro (ur.).
Madrid, 2013. 20-20 (plenarno predavanje,sažetak,znanstveni). URL link to work

2. Šiber, Antonio.
Condensed DNA toroids in bacteriophage capsids // From Solid State To BioPhysics VI.
(plenarno predavanje,sažetak,znanstveni).
Vrh
 
  Sažeci u zbornicima skupova
 

1. Marion, Sanjin; Šiber, Antonio.
Modeling DNA in viral capsids: liquid crystal with bending // 8th Christmas Biophysics Workshop : Book of Abstracts / Ziherl, Primož ; Krajnc, Matej (ur.).
Ljubljana : Institut Jožef Stefan, 2013. 35-34 (predavanje,sažetak,znanstveni).

2. Šiber, Antonio.
Non-toroidal conformations of DNA condensed in spherical confinement // 8th Christmas Biophysics Workshop : Book of Abstracts / Ziherl, Primož ; Krajnc, Matej (ur.).
Ljubljana : Institut Jožef Stefan, 2013. 37-37 (predavanje,sažetak,znanstveni). URL link to work

3. Šiber, Antonio; Ziherl, Primož.
Many-body contact repulsion of deformable disks // Physics of Complex Colloids Book of Abstracts / Ziherl, Primož (ur.).
Ljubljana, 2013. 187-187 (poster,međunarodna recenzija,sažetak,znanstveni). prilozen text radaURL link to work

4. Šiber, Antonio.
Viruses as self-assembled nanoparticles // Nanobiotechnology Workshop, JRC Ispra 2012.
(pozvano predavanje,sažetak,znanstveni).

5. Šiber, Antonio; Lošdorfer Božič, Anže; Podgornik, Rudolf.
Importance of electrostatic interactions for virus assembly and structure // Workshop on Physical Virology, ICTP.
(pozvano predavanje,međunarodna recenzija,sažetak,znanstveni). URL link to work

6. Šiber, Antonio; Lošdorfer Božič, Anže; Podgornik, Rudolf.
Charge distributions and electrostatic interactions in viruses // .
(pozvano predavanje,sažetak,znanstveni). URL link to work

7. Popović, Marko; Šiber, Antonio.
Poisson-Boltzmann approach for sterically asymmetric electrolytes // 7th Christmas Biophysics Workshop : Book of Abstracts / Pabst, Georg ; Heftberger, Peter ; Kollmitzer, Benjamin (ur.).
Graz, 2012. 6-6 (predavanje,sažetak,znanstveni). URL link to work

8. Šiber, Antonio.
Mean-field electrostatics explained through application to viruses // Biomolecular complexes and assemblies : book of abstracts / Hozić, Amela ; Vuletić, Tomislav (ur.).
Zagreb : Institut Ruđer Bošković ; Hrvatsko biofizičko društvo, 2012. 59-59 (predavanje,sažetak).

9. Šiber, Antonio; Ziherl, Primož.
Many-body contact repulsion of deformable disks // 7th Christmas Biophysics Workshop : Book of Abstracts / Pabst, Georg ; Heftberger, Peter ; Kollmitzer, Benjamin (ur.).
Graz, 2012. 6-6 (predavanje,sažetak,znanstveni). URL link to work

10. Šiber, Antonio.
In viro DNA condensation in the extended Ubbink-Odijk model // 6th Christmas Biophysics Workshop: Book of Abstracts / Šiber, Antonio (ur.).
Zagreb, 2011. 18-18 (predavanje,sažetak,znanstveni). URL link to work

11. Šiber, Antonio.
Interactions governing virus self-assembly // Regional Biophysics Conference 2010 Book of Abstracts / Bojan Žagrović (ur.).
2010. 8-8 (pozvano predavanje,sažetak,znanstveni).

12. Šiber, Antonio.
Theoretical and experimental analysis of a thin elastic cylindrical tube acting as a non-Hookean spring // 5th Christmas Biophysics Workshop: Book of Abstracts / Hočevar, Ana ; Ziherl, Primož (ur.).
Ljubljana, 2010. 13-13 (predavanje,sažetak,znanstveni). URL link to work

13. Šiber, Antonio; Zandi, Roya; Podgornik, Rudolf.
Thermodynamics of nanospheres encapsulated in virus capsids // 4th Christmas Biophysics Workshop, Soft Matter meets Biological Physics / Georg Pabst (ur.).
Graz, 2009. 14-14 (predavanje,sažetak,znanstveni). URL link to work

14. Šiber, Antonio.
Elasticity of viral capsids // International Conference and BioPhysics Summer School From Solid State to Biophysics IV / Forro, Laszlo ; Pavuna, Davor (ur.).
Lausanne : Ecole Polytechnique Federale de Lausanne, 2008. (predavanje,sažetak,znanstveni).

15. Šiber, Antonio; Majdandžić, Antonio.
Influence of energetics of protein contacts on polydispersity of assembled empty virus capsids in thermodynamical equilibrium // 3rd Christmas Biophysics Workshop: Organized Molecular Systems / Vuletić, Tomislav (ur.).
Zagreb, 2008. (predavanje,sažetak,znanstveni).

16. Šiber, Antonio.
Uloga elektrostatskih interakcija u sastavljanju RNA virusa // Knjiga sažetaka 5. znanstvenog sastanka Hrvatskog fizikalnog društva / Antonije Dulčić (ur.).
Zagreb : Hrvatsko filozofsko društvo, 2007. 29-29 (pozvano predavanje,domaća recenzija,sažetak,znanstveni).

17. Šiber, Antonio.
Carbon sp2 shapes, viruses and theory of elasticity // Math/Chem/Comp 2006.
2006. 78-78 (pozvano predavanje,međunarodna recenzija,sažetak,znanstveni).
Vrh
 
  Neobjavljena sudjelovanja na skupovima
 

1. Šiber, Antonio.
Collapse of elastic icosadeltahedral shells under external pressure // .
(predavanje,neobjavljeni rad,znanstveni).

2. Šiber, Antonio.
Shapes and energetics of bucky-assemblies // .
(pozvano predavanje,neobjavljeni rad,znanstveni).
Vrh
 
  Diplomski radovi
 

1. Krešić, Ivor.
Sterički modificirana Poisson-Boltzmannova jednadžba / završni rad - diplomski/integralni studij.
Zagreb : Prirodoslovno-matematički fakultet, 11.03. 2013, 49 str. Voditelj: Šiber, Antonio.URL link to work

2. Marelja, Marko.
Simulacija ne-sfernih zrcala i anamorfnih slika metodom praćenja svjetlosnih zraka / završni rad - diplomski/integralni studij.
Zagreb : Prirodoslovno-matematički fakultet, Fakultet za fiziku, 14.12. 2012, 62 str. Voditelj: Šiber, Antonio.URL link to work

3. Buča, Berislav.
Elementi teorije stohastičkih procesa u biofizici i ekonofizici / završni rad - diplomski/integralni studij.
Zagreb : Prirodoslovno-matematički fakultet, Fakultet za fiziku, 16.09. 2011, 57 str. Voditelj: Šiber, Antonio.

4. Paun, Bruno.
Istraživanje kaustike metodom praćenja svjetlosnih zraka i usporedba s eksperimentom / završni rad - diplomski/integralni studij.
Zagreb : Prirodoslovno-matematički fakultet, 26.09. 2011., 107 str. Voditelj: Šiber, Antonio.

5. Kunštek, Kristijan.
Reprezentacija učinka kompleksnih optičkih elemenata metodom praćenja zraka / završni rad - diplomski/integralni studij.
Zagreb : Prirodoslovno matematički fakultet, 26.07. 2010, 94 str. Voditelj: Šiber, Antonio.
Vrh
 
  Druge vrste radova
 

1. Marion, Sanjin.
Korak prema pametnijim staklima, 2013. (popularni rad).

2. Šiber, Antonio.
Some physics of viruses and the grand questions still unanswered, 2013. (audio/video zapis). URL link to work

3. Šiber, Antonio.
Cover page of Phys.Chem.Chem.Phys 14(11), 2012, 2012. (ostalo). URL link to work

4. Šiber, Antonio.
Ilustracija za naslovnu stranicu Soft Matter 4 (10), 2008., 2008. (ostalo). URL link to work

5. Šiber, Antonio.
Podrijetlo oblika i strukture: fizikalni pogled, 2007. (popularni rad). URL link to work

6. Šiber, Antonio.
Icosadeltahedral geometry of fullerenes, viruses and geodesic domes, 2007. (popularni rad). URL link to work

7. Šiber, Antonio.
Građa virusa, 2006. (popularni rad).
Vrh
 

Zbog završnih aktivnosti vezano uz migraciju CROSBI-ja na CroRIS platformu unos i uređivanje zapisa neće biti moguć u razdoblju od petka 7.7.2023. u 12 sati do ponedjeljka 11.7.2023.

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