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Uredničke knjige
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1.
The 3rd Adriatic Meeting on Computational Solutions in Life Sciences : book of abstracts
/ Babić, Darko; Došlić, Nadja; Smith, David; Tomić, Sanja; Vlahoviček, Kristian (ur.).
Zagreb : Institute of Computational Life Sciences (ICLS), 2009 (zbornik).
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2.
The 2nd Opatija Meeting on Computational Solutions in Life Sciences : book of abstracts
/ Babić, Darko; Došlić, Nadja; Smith, David; Tomić, Sanja; Vlahoviček, Kristian (ur.).
Zagreb : Institute of Computational Life Sciences (ICLS), 2007 (zbornik).
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Poglavlja u knjizi
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Izvorni znanstveni i pregledni radovi u CC časopisima
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1. Abe, Ken-ichiro; Yamamoto, Ryoma; Franke, Vedran; Cao, Minjun; Suzuki, Yutaka; Suzuki, Masataka G; Vlahoviček, Kristian; Svoboda, Petr; Schultz, Richard M; Aoki, Fugaku.
The first murine zygotic transcription is promiscuous and uncoupled from splicing and 3′ processing. // EMBO journal. 34 (2015) , 11; 1523-1537 (članak, znanstveni).  
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2. Polak, Paz; Karlić, Rosa; Koren, Amnon; Thurman, Robert; Sandstrom, Richard; Lawrence, Michael S.; Reynolds, Alex; Rynes, Eric; Vlahoviček, Kristian; Stamatoyannopoulos, John A.; Sunyaev, Shamil R.
Cell-of-origin chromatin organization shapes the mutational landscape of cancer. // Nature. 518 (2015) , 7539; 360-364 (članak, znanstveni).
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3. Falanga, Alessia; Stojanovic, Ozren; Kiffer-Moreira, Tina; Pinto, Sofia; Millan, Jose Luis; Vlahoviček, Kristian; Baralle, Marco.
Exonic splicing signals impose constraints upon the evolution of enzymatic activity. // Nucleic acids research. 42 (2014) , 9; 5790-5798 (članak, znanstveni).
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4. Koren, Amnon; Handsaker, Robert E.; Kamitaki, Nolan; Karlić, Rosa; Ghosh, Sulagna; Polak, Paz; Eggan, Kevin; McCarroll, Steven A.
Genetic variation in human DNA replication timing. // Cell. 159 (2014) , 5; 1015-1026 (članak, znanstveni).
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5. Flemr, Matyas; Malik, Radek; Franke, Vedran; Nejepinska, Jana; Sedlacek, Radislav; Vlahoviček, Kristian; Svoboda, Petr.
A retrotransposon-driven Dicer isoform directs endogenous siRNA production in mouse oocytes. // Cell. 155 (2013) , 4; 807-816 (članak, znanstveni).
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6. Roller, Maša; Lucić, Vedran; Nagy, István; Perica, Tina; Vlahoviček, Kristian.
Environmental shaping of codon usage and functional adaptation across microbial communities. // Nucleic acids research. 41 (2013) , 19; 8842-8852 (članak, znanstveni).
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7. Zampieri, Stefania; Montalvo, Annalisa; Blanco, Mariana; Zanin, Irene; Amartino, Hernan; Vlahoviček, Kristian; Szlago, Marina; Schenone, Andrea; Pittis, Gabriela; Bembi, Bruno; Dardis, Andrea.
Molecular analysis of HEXA gene in Argentinean patients affected with Tay–Sachs disease: Possible common origin of the prevalent c.459 + 5A>G mutation. // Gene. 499 (2012) , 2; 262-265 (članak, znanstveni).
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8. Perina, Dragutin; Korolija, Marina; Roller, Maša; Harcet, Matija; Jeličić, Branka; Mikoč, Andreja; Ćetković, Helena.
Over-represented localized sequence motifs in ribosomal protein gene promoters of basal metazoans. // Genomics. 98 (2011) , 1; 56-63 (članak, znanstveni).
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9. Pinto, Sofia; Vlahoviček, Kristian; Buratti, Emanuele.
PRO-MINE: A Bioinformatics Repository and Analytical Tool for TARDBP Mutations. // Human mutation. 32 (2011) , 1; E1948-E1958 (članak, znanstveni).
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10. Harcet, Matija; Roller, Maša; Ćetković, Helena; Perina, Dragutin; Wiens, Matthias; Müller, Werner E.G.; Vlahoviček, Kristian.
Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans. // Molecular biology and evolution. 27 (2010) , 12; 2747-2756 (članak, znanstveni). 
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11. Karlić, Rosa; Chung, Ho-Ryun; Lasserre, Julia; Vlahoviček, Kristian; Vingron, Martin.
Histone modification levels are predictive for gene expression. // Proceedings of the National Academy of Sciences of the United States of America. 107 (2010) , 7; 2926-2931 (članak, znanstveni).
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12. Pučić, Maja; Pinto, Sofie; Novokmet, Mislav; Knežević, Ana; Gornik, Olga; Polašek, Ozren; Vlahoviček, Kristian; Wang, Wei; Rudd, Pauline M,; Wright, Alan F.; Campbell, Harry; Rudan, Igor; Lauc, Gordan.
Common aberrations from the normal human plasma N-glycan profile. // Glycobiology. 20 (2010) , 8; 970-975 (članak, znanstveni).
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13. Supek, Fran; Škunca, Nives; Repar, Jelena; Vlahoviček, Kristian; Šmuc, Tomislav.
Translational Selection Is Ubiquitous in Prokaryotes. // Plos genetics. 6 (2010) , 6; (članak, znanstveni).
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14. Šegota, Igor; Bartoniček, Nenad; Vlahoviček, Kristian.
MADNet: MicroArray Database Network web server. // Nucleic Acids Research. 36 (2008) , Suppl. S; W332-W335 (članak, znanstveni).
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Znanstveni radovi u drugim časopisima
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1. Šikić, Mile; Tomić, Sanja; Vlahoviček, Kristian.
Prediction of Protein-Protein Interaction Sites in Sequences and 3D Structures by Random Forests. // Plos computational biology. 5 (2009) , 1; e1000278-1-e1000278-9 (članak, znanstveni).
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2. Zampieri, Stefania; Filocamo, Mirella; Buratti, Emanuele; Stroppiano, Marina; Vlahoviček, Kristian; Rosso, Natalia; Bignulin, Eleonora; Regis, Stefano; Carnevale, Franco; Bembi, Bruno; Dardis, Andrea.
Molecular and functional analysis of the HEXB gene in Italian patients affected with Sandhoff disease: identification of six novel alleles.. // Neurogenetics. 10 (2009) , 1; 49-58 (članak, znanstveni).
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Plenarna izlaganja
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1. Lucić, Vedran; Roller Milošević, Maša; Perica, Tina; Vlahoviček, Kristian.
Codon usage at the level of microbial communities // Acta Microbiol Immunol Hun / Nagy, Karoly ; Marialigeti, Karoly (ur.).
Budimpešta : Akadémiai Kiadó, 2009. (plenarno predavanje,međunarodna recenzija,sažetak,znanstveni).
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Sažeci u zbornicima skupova
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1. Pinto, Sofia; Tica, Jelena; Vlahoviček, Kristian.
Computational Analysis of Plasma Glycome and Genotypes // EMBO YIP PhD Course, Spotlights on Current Biology / Gerlind Wallon (ur.).
(predavanje,sažetak,znanstveni).
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2. Harcet, Matija; Roller, Maša; Ćetković, Helena; Perina, Dragutin; Wiens, Matthias; Müller, Werner E.G.; Vlahoviček, Kristian.
Demosponge EST sequencing reveals a complex genetic toolkit of the simplest metazoans // .
(predavanje,sažetak,znanstveni).
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3. Harcet, Matija; Roller Milošević, Maša; Ćetković, Helena; Perina, Dragutin; Wiens, Matthias; Mueller, Werner; Vlahoviček, Kristian.
Demosponge EST Sequencing Reveals a Complex Genetic Toolkit of the Simplest Metazoans // Comparative Genomics of Eukaryotic Microorganisms.
Sant Feliu de Guíxols, 2011. 150-150 (poster,međunarodna recenzija,sažetak,znanstveni).
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4. Kokan, Tina; Vlahoviček, Kristian.
Computational analysis of the relationship between transcription and DNA flexibility in human and fruit fly DNA // Book of Abstracts of the 10th Congress of the Croatian Society of Biochemistry and Molecular Biology with international participation "The secret life of biomolecules", HDBMB2010 / Kovarik, Zrinka ; Varlje, Jadranka (ur.).
Rijeka : Hrvatsko Društvo za Biotehnologiju, 2010. 154-154 (poster,međunarodna recenzija,sažetak,znanstveni).
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5. Lucić, Vedran; Roller, Maša; Perica, Tina; Vlahoviček, Kristian.
Translational optimization and functional adaptation across microbial communities // Book of Abstracts of the 10th Congress of the Croatian Society of Biochemistry and Molecular Biology with international participation "The secret life of biomolecules", HDBMB2010 / Kovarik, Zrinka ; Varlje, Jadranka (ur.).
Rijeka : Hrvatsko Društvo za Biotehnologiju, 2010. 153-153 (poster,međunarodna recenzija,sažetak,znanstveni).
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6. Pinto, Sofia; Stojanović, Ozren, Vlahoviček, Kristian.
Computational analysis of exonic splicing enhancers // Book of Abstracts of the 10th Congress of the Croatian Society of Biochemistry and Molecular Biology with international participation "The secret life of biomolecules", HDBMB2010 / Kovarik, Zrinka ; Varlje, Jadranka (ur.).
Rijeka : Hrvatsko Društvo za Biotehnologiju, 2010. 155-155 (poster,međunarodna recenzija,sažetak,znanstveni).
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7. Roller, Maša; Lucić, Vedran; Perica, Tina; Vlahoviček, Kristian.
Translational optimization and functional adaptation across microbial communities // The EMBO meeting: advancing the life sciences.
2010. 97-97 (poster,međunarodna recenzija,sažetak,znanstveni).
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8. Roller, Maša; Lucić, Vedran; Perica, Tina; Vlahoviček, Kristian.
Translational optimization and functional adaptation across microbial communities // The EMBO meeting: advancing the life sciences.
2010. 97-97 (predavanje,međunarodna recenzija,sažetak,znanstveni).
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9. Roller, Maša; Lucić, Vedran; Perica, Tina; Vlahoviček, Kristian.
Translational optimization and functional adaptation across microbial communities // EMBO YIP PhD Course, Spotlights on Current Biology / Gerlind Wallon (ur.).
2010. 13-13 (predavanje,sažetak,znanstveni).
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10. Karlić, Rosa; Chung, Ho-Ryun; Lasserre, Julia; Vlahoviček, Kristian; Vingron, Martin.
Towards a histone code for transcription. // .
(poster,međunarodna recenzija,sažetak,znanstveni).
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11. Lucić, Vedran; Perica, Tina; Roller Milošević, Maša; Vlahoviček, Kristian.
Codon usage bias in metagenomes // Book of Abstracts, The 3rd Adriatic Meeting on Computational Solutions in Life Sciences.
Zagreb, 2009. 64-64 (poster,sažetak,znanstveni).
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12. Pinto, Sofia; Stojanović, Ozren; Vlahoviček, Kristian.
Computational Analysis of Exonic Splicing Regulators // The 3rd Adriatic Meeting on Computational Solutions in Life Sciences : book of abstracts / Babić, Darko et al. (ur.).
Zagreb : Institute of Computational Life Sciences (ICLS), 2009. (poster,sažetak,znanstveni).
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13. Kokan, Tina; Karlić, Rosa; Vlahoviček, Kristian.
Flexibility profiling of gene transcription start and end sites on human and fruit fly DNA // 50 godina molekularne biologije u Hrvatskoj.
(poster,sažetak,znanstveni).
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14. Lucić, Vedran; Perica, Tina; Roller Milošević, Maša; Vlahoviček, Kristian.
Codon usage bias in metagenomes // .
(poster,sažetak,znanstveni).
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15. Lucić, Vedran; Perica, Tina; Vlahoviček, Kristian.
Codon usage bias in metagenomes // EMBO YIP PhD Course, Spotlights on Current Biology / Gerlind Wallon (ur.).
Heidelberg, 2008. 11-11 (predavanje,sažetak,znanstveni).
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16. Kokan, Tina; Vlahoviček, Kristian.
Computational analysis of the location of highly curved DNA regions in human genome // The 2nd Opatija meeting On Computational Solutions in the Life Sciences / Babić, Darko ; Došlić, Nađa ; Smith, David ; Tomić, Sanja ; Vlahoviček, Kristian (ur.).
Zagreb : Institute of Computational Life Sciences (ICLS), 2007. (poster,sažetak,znanstveni).
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Neobjavljena sudjelovanja na skupovima
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1. Pinto, Sofia; Vlahoviček, Kristian.
Data Classification Based on Machine Learning // .
(poster,neobjavljeni rad,znanstveni).
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2. Karlić, Rosa; Chung, Ho-Ryun; Lasserre, Julia; Vlahoviček, Kristian; Vingron, Martin.
Histone modification levels are predictive of gene expression // .
(pozvano predavanje,neobjavljeni rad,znanstveni).
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3. Karlić, Rosa; Chung, Ho-Ryun; Lasserre, Julia; Vlahoviček, Kristian; Vingron, Martin.
Histone modification levels are predictive for gene expression // .
(predavanje,međunarodna recenzija,neobjavljeni rad,znanstveni).
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4. Pinto, Sofia; Tica, Jelena; Vlahoviček, Kristian.
Advanced computing can identify people with specific glyco-phenotypes // .
(pozvano predavanje,neobjavljeni rad,znanstveni).
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5. Kokan, Tina; Vlahoviček, Kristian.
Structure-function relationship between flexibility and transcription initiation and termination in human and fruit fly DNA // .
(predavanje,ppt prezentacija,znanstveni).
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6. Kokan, Tina; Vlahoviček, Kristian.
Structure-function relationship between flexibility and transcription initiation and termination in human and fruit fly DNA // .
(poster,neobjavljeni rad,znanstveni).
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7. Lucić, Vedran; Perica, Tina; Roller Milošević, Maša; Vlahoviček, Kristian.
Codon usage bias in metagenomes // .
(poster,neobjavljeni rad,znanstveni).
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8. Pinto, Sofia; Stojanović, Ozren; Vlahoviček, Kristian.
Computational Analysis of Exonic Splicing Regulators // .
(poster,neobjavljeni rad,znanstveni).
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9. Pinto, Sofia; Stojanović, Ozren; Vlahoviček, Kristian.
Računalna Analiza Regulatora Izrezivanja u Egzonima // 50 godina molekularne biologije u Hrvatskoj.
(predavanje,ppt prezentacija,znanstveni).
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10. Karlić, Rosa; Vlahoviček, Kristian; Vingron, Martin.
Histone modifications and transcriptional regulation // .
(poster,međunarodna recenzija,neobjavljeni rad,znanstveni).
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Disertacije
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Diplomski radovi
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1. Glažar, Petar.
Contextual analysis and visualization of high- throughput data / diplomski rad.
Zagreb : Prirodoslovno-matematički fakultet, 07.12. 2011,
34 str. Voditelj: Vlahoviček, Kristian.
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2. Tica, Jelena.
Computational analysis of plasma glycome and genotypes in human population / završni rad - diplomski/integralni studij.
Zagreb : Prirodoslovno-matematički fakultet, 10.11. 2011.,
56 str. Voditelj: Vlahoviček, Kristian.
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3. Vedran Franke.
Predviđanje protein - protein interakcija iz primarne strukture putem "random forest" klasifikatora / završni rad - diplomski/integralni studij.
Zagreb : Prirodoslovno - Matematičcki Fakultet, 15.10. 2010.,
32 str. Voditelj: Vlahoviček, Kristian.
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4. Roller Milošević, Maša.
Analysis of metagenomes in extreme environments / diplomski rad.
Zagreb : Prirodoslovno-matematički fakultet, 09.09. 2009,
33 str. Voditelj: Vlahoviček, Kristian.
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5. Stojanović, Ozren.
Computational analysis of exonic splicing regulators / diplomski rad.
Zagreb : Prirodoslovno-matematički fakultet, 03.07. 2008.,
38 str. Voditelj: Vlahoviček, Kristian.
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6. Vitezić, Morana.
Primjena upotrebe obrazaca kodonau molekularnoj evoluciji / diplomski rad.
Zagreb : Prirodoslovno-matematički fakultet, 29.04. 2008,
47 str. Voditelj: Kristian Vlahoviček.
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7. Kokan, Tina.
Računalna analiza položaja visokozakrivljenih regija u genomu čovjeka / diplomski rad.
Zagreb : Prirodoslovno-matematički fakultet, 07.11. 2007,
43 str. Voditelj: Vlahoviček, Kristian.
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Druge vrste radova
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Sadržaj objavljen na bib.irb.hr (osim ako je drugačaije navedeno) podložan je pravilima Creative Commons licence
