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Simple Docking Trials with GARLIC

Garlic is a free, open source molecular visualization program, written for unix and unix clones. It is capable to load and display a number of molecular structures, the only limitation being imposed by the available memory. Each loaded object is manipulated individually. Different drawing and color schemes may be used to distinguish different objects. A number of special rectangular maps was designed to visualize the contact regions of both structures. These maps, inspired by geographic projections and by some methods of scientific and technical data presentation make it possible to identify collision areas, unfavorable contacts and other information important for docking.

molecular visualization; docking; Garlic

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