Identify pathogen organisms from a stream of RNA sequences (CROSBI ID 395026)
Ocjenski rad | diplomski rad
Podaci o odgovornosti
Šošić, Matija
Šikić, Mile
engleski
Identify pathogen organisms from a stream of RNA sequences
Metagenomics is an interesting new field of science focused on characterization of microbial communities from environmental samples. It is especially important as many organisms cannot be cultivated in a laboratory and therefore can reveal previously unknown species. This thesis presents a taxonomy- dependent alignment-based method for determining species present in a given metagenomic sample. Main premise is identification and analysis of ribosomal coding sequences which are considered to be indicators of presence of organisms. The solution works with RNA-seq data and is tested on a real dataset from an environmental sample
Keywords: metagenomics; bioinformatics; RNA-Seq
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Podaci o izdanju
33
29.06.2014.
obranjeno
Podaci o ustanovi koja je dodijelila akademski stupanj
Fakultet elektrotehnike i računarstva
Zagreb