RNA-seq mapper (CROSBI ID 397075)
Ocjenski rad | diplomski rad
Podaci o odgovornosti
Jerković, Igor
Šikić, Mile
engleski
RNA-seq mapper
RNA sequencing is a method for transcriptome analysis. Understanding the transcriptome is essential for various reasons such as interpreting the functional elements of the genome and undrestanding development of diseases, among many other use cases. This thesis presents a new RNA-seq spliced alignment algorithm, that uses finding the longest increasing subsequence in detecting splice sites and mapping spliced reads across exon junctions. Comparison between some of the state-of-the-art tools such as Tophat and BBMap are given.
RNA sequencing; hash; longest increasing subsequence; bioinformatics; genome; transcriptome
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Podaci o izdanju
38
01.07.2014.
obranjeno
Podaci o ustanovi koja je dodijelila akademski stupanj
Fakultet elektrotehnike i računarstva
Zagreb