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Aspects of DNA Assembly Acceleration on Reconfigurable Platforms

Modern DNA sequencing instruments produce read sequences that are considerably shorter than that of the genomes, or of the studied genomic features. In order to obtain the sequence of the entire genome, these sequences need to be assembled together. For this reason, DNA assembly is the first and the most important step in any genomics project. However, it presents a very computationally intensive and resource-consuming task. For this reason, various methods for DNA assembly acceleration are explored in practice. In this pap

de novo; reference; mapping; FPGA; systolic array

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