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izvor podataka: crosbi

Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance (CROSBI ID 237673)

Prilog u časopisu | izvorni znanstveni rad | međunarodna recenzija

Šošić, Martin ; Šikić, Mile Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance // Bioinformatics, 33 (2017), 9; 1394-1395. doi: 10.1093/bioinformatics/btw753

Podaci o odgovornosti

Šošić, Martin ; Šikić, Mile

engleski

Edlib: a C/C ++ library for fast, exact sequence alignment using edit distance

We present Edlib, an open-source C/C ++ library for exact pairwise sequence alignment using edit distance. We compare Edlib to other libraries and show that it is the fastest while not lacking in functionality and can also easily handle very large sequences. Being easy to use, flexible, fast and low on memory usage, we expect it to be easily adopted as a building block for future bioinformatics tools. Availability and Implementation: Source code, installation instructions and test data are freely available for download at https://github.com/Martinsos/edlib, under the MIT licence. Edlib is implemented in C/C ++ and supported on Linux, MS Windows, and Mac OS.

sequence alignment ; global alignment ; semi-global alignment ; edit distance

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Podaci o izdanju

33 (9)

2017.

1394-1395

objavljeno

1367-4803

1460-2059

10.1093/bioinformatics/btw753

Povezanost rada

Biologija, Računarstvo

Poveznice
Indeksiranost