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Bibliographic record number: 667283

Journal

Authors: Butorac, Ana; Dodig, Ivana; Bačun-Družina, Višnja; Tishbee, Arye; Mrvčić, Jasna; Hock, Karlo; Diminić, Janko; Cindrić, Mario
Title: The effect of starvation stress on Lactobacillus brevis L62 protein profile determined by de novo sequencing in positive and negative mass spectrometry ion mode
Source: RCM. Rapid communications in mass spectrometry (0951-4198) 27 (2013), 9; 1045-1054
Paper type: article
Keywords: Lactobacillus brevis; nutrient deprivation; protein identification; peptide sequences; mass spectrometry; MALDI
Abstract:
We describe a novel negative chemically activated fragmentation/positive chemically activated fragmentation (CAF-/CAF+) technique for protein identification. The technique was used to investigate Lactobacillus brevis adaptation to nutrient deprivation. The CAF-/CAF+ method enables de novo sequencing of derivate peptides with negative and positive ion mode matrix-assisted laser desorption/ionization (MALDI) tandem mass spectrometry (MS/MS). Peptide sequences obtained from MS/MS spectra were matched against the National Center for Biotechnology Information (NCBI) non-redundant (nr) database and confirmed by the mass spectrometry data of elucidated peptide mass sequences derived from the annotated genome. This improved protein identification method highlighted 36 differentially expressed proteins in the proteome of L. brevis after 75 days of starvation. The results revealed the key differences in the metabolic pathways that are responsible for the survival of L. brevis in a hostile environment. Proteomics analysis demonstrated that numerous proteins engaged in glucose and amino-acid catabolizing pathways, glycerolipid metabolizing pathways, and stress-response mechanisms are differentially expressed after long-term starvation. Amino acid and proteomics analysis indicated that starved L. brevis metabolized arginine, glycine, and histidine from dead cells as alternative nutrient sources. The production of lactic acid also varied between the parent cells and the starved cells. Differentially expressed proteins identified exclusively by peptide sequence reading provided promising results for CAF-/CAF+ implementation in a standard proteomics workflow (e.g., biomarker and mutation discovery and biotyping). The practical performance of a reliable de novo sequencing technique in routine proteomics analysis is emphasized in this article.
Project / theme: 098-0000000-3454, 058-0583444-3483, 058-0583444-3466, 058-0000000-3475
Original language: ENG
Citation databases: Current Contents Connect (CCC)
MEDLINE
Scopus
SCI-EXP, SSCI i/ili A&HCI
Science Citation Index Expanded (SCI-EXP) (sastavni dio Web of Science Core Collectiona)
Category: Znanstveni
Research fields:
Biotechnology
Full paper text: 667283.2013_Butorac_et_al.pdf (tekst priložen 20. Pro. 2013. u 15:03 sati)
URL: http://onlinelibrary.wiley.com/doi/10.1002/rcm.6528/full
http://onlinelibrary.wiley.com/doi/10.1002/rcm.6528/abstract;jsessionid=F981D2DFDBEC274A96EA599B6118E343.f03t04
Broj citata:
Altmetric:
DOI: 10.1002/rcm.6528
URL cjelovitog rada:
Google Scholar: The effect of starvation stress on Lactobacillus brevis L62 protein profile determined by de novo sequencing in positive and negative mass spectrometry ion mode
Contrib. to CROSBI by: Daslav Hranueli (dhranueli@pbf.hr), 20. Pro. 2013. u 15:03 sati



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